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Here you will find a list of some of the research papers linked to our HREM sysytem:

0. Pokhrel, N., E. Ben-Tal Cohen, O. Genin, D. Sela-Donenfeld and Y. Cinnamon,
Cellular and morphological characterization of blastoderms from freshly laid broiler eggs.
Poult Sci, 2017.

(https://www.ncbi.nlm.nih.gov/pubmed/29053871)
 
1. Zhou, Z., J. Wang, C. Guo, W. Chang, J. Zhuang, P. Zhu, and X. Li, Temporally
Distinct Six2-Positive Second Heart Field Progenitors Regulate Mammalian Heart
Development and Disease. Cell Rep, 2017. 18(4): p. 1019-1032.

(https://www.ncbi.nlm.nih.gov/pubmed/28122228)
 
2. Le Garrec, J.F., J.N. Dominguez, A. Desgrange, K.D. Ivanovitch, E. Raphael, J.A.
Bangham, M. Torres, E. Coen, T.J. Mohun, and S.M. Meilhac, A predictive model of
asymmetric morphogenesis from 3D reconstructions of mouse heart looping dynamics.
Elife, 2017. 6.

(https://www.ncbi.nlm.nih.gov/pubmed/29179813)
 
3. Geyer, S.H., L.F. Reissig, M. Husemann, C. Hofle, R. Wilson, F. Prin, D. Szumska, A.
Galli, D.J. Adams, J. White, T.J. Mohun, and W.J. Weninger, Morphology, topology and
dimensions of the heart and arteries of genetically normal and mutant mouse embryos at
stages S21-S23. J Anat, 2017. 231(4): p. 600-614.

(https://www.ncbi.nlm.nih.gov/pubmed/28776665)
 
4. Geyer, S.H., L. Reissig, J. Rose, R. Wilson, F. Prin, D. Szumska, R. Ramirez-Solis,
C. Tudor, J. White, T.J. Mohun, and W.J. Weninger, A staging system for correct
phenotype interpretation of mouse embryos harvested on embryonic day 14 (E14.5). J
Anat, 2017. 230(5): p. 710-719.

(https://www.ncbi.nlm.nih.gov/pubmed/28185240)
 
5. Geyer, S.H., B. Maurer-Gesek, L.F. Reissig and W.J. Weninger, High-resolution
Episcopic Microscopy (HREM) - Simple and Robust Protocols for Processing and
Visualizing Organic Materials. J Vis Exp, 2017(125).

(https://www.ncbi.nlm.nih.gov/pubmed/28715372)
 
6. Anderson, R.H., B. Jensen, T.J. Mohun, S.E. Petersen, N. Aung, F. Zemrak, R.N.
Planken, and D.H. MacIver, Key Questions Relating to Left Ventricular Noncompaction
Cardiomyopathy: Is the Emperor Still Wearing Any Clothes? Can J Cardiol, 2017. 33(6):
p. 747-757.

(https://www.ncbi.nlm.nih.gov/pubmed/28395867)
 
7. Aiello, V.D., D.E. Spicer, R.H. Anderson, N.A. Brown and T.J. Mohun, The
independence of the infundibular building blocks in the setting of double-outlet right
ventricle. Cardiol Young, 2017. 27(5): p. 825-836.

(https://www.ncbi.nlm.nih.gov/pubmed/28555539)
 
8. Zak, J., V. Vives, D. Szumska, A. Vernet, J.E. Schneider, P. Miller, E.A. Slee, S.
Joss, Y. Lacassie, E. Chen, L.F. Escobar, M. Tucker, A.S. Aylsworth, H.A. Dubbs, A.T.
Collins, J. Andrieux, A. Dieux-Coeslier, E. Haberlandt, D. Kotzot, D.A. Scott, M.J. Parker,
Z. Zakaria, Y.S. Choy, D. Wieczorek, A.M. Innes, K.R. Jun, S. Zinner, F. Prin, C.A.
Lygate, P. Pretorius, J.A. Rosenfeld, T.J. Mohun, and X. Lu, ASPP2 deficiency causes
features of 1q41q42 microdeletion syndrome. Cell Death Differ, 2016. 23(12): p. 1973-
1984.

(https://www.ncbi.nlm.nih.gov/pubmed/27447114)
 
9. Wilson, R., S.H. Geyer, L. Reissig, J. Rose, D. Szumska, E. Hardman, F. Prin, C.
McGuire, R. Ramirez-Solis, J. White, A. Galli, C. Tudor, E. Tuck, C. Mazzeo, J.C. Smith,
E. Robertson, D.J. Adams, T. Mohun, and W.J. Weninger, Highly variable penetrance of
abnormal phenotypes in embryonic lethal knockout mice. Wellcome Open Res, 2016. 1:
p. 1.

(https://www.ncbi.nlm.nih.gov/pubmed/27996060)
 
10. Lana-Elola, E., S. Watson-Scales, A. Slender, D. Gibbins, A. Martineau, C. Douglas,
T. Mohun, E.M. Fisher, and V. Tybulewicz, Genetic dissection of Down syndrome-
associated congenital heart defects using a new mouse mapping panel. Elife, 2016. 5.

(https://www.ncbi.nlm.nih.gov/pubmed/26765563)
 
11. Huang, Y.C., F. Chen and X. Li, Clarification of mammalian cloacal morphogenesis
using high-resolution episcopic microscopy. Dev Biol, 2016. 409(1): p. 106-13.

(https://www.ncbi.nlm.nih.gov/pubmed/26485363)
 
12. Henkelman, R.M., M. Friedel, J.P. Lerch, R. Wilson and T. Mohun, Comparing
homologous microscopic sections from multiple embryos using HREM. Dev Biol, 2016.
415(1): p. 1-5.

(https://www.ncbi.nlm.nih.gov/pubmed/27208393)
 
13. Dickinson, M.E., A.M. Flenniken, X. Ji, L. Teboul, M.D. Wong, J.K. White, T.F.
Meehan, W.J. Weninger, H. Westerberg, H. Adissu, C.N. Baker, L. Bower, J.M. Brown,
L.B. Caddle, F. Chiani, D. Clary, J. Cleak, M.J. Daly, J.M. Denegre, B. Doe, M.E. Dolan,
S.M. Edie, H. Fuchs, V. Gailus-Durner, A. Galli, A. Gambadoro, J. Gallegos, S. Guo, N.R.
Horner, C.W. Hsu, S.J. Johnson, S. Kalaga, L.C. Keith, L. Lanoue, T.N. Lawson, M. Lek,
M. Mark, S. Marschall, J. Mason, M.L. McElwee, S. Newbigging, L.M. Nutter, K.A.
Peterson, R. Ramirez-Solis, D.J. Rowland, E. Ryder, K.E. Samocha, J.R. Seavitt, M.
Selloum, Z. Szoke-Kovacs, M. Tamura, A.G. Trainor, I. Tudose, S. Wakana, J. Warren,
O. Wendling, D.B. West, L. Wong, A. Yoshiki, C. International Mouse Phenotyping, L.
Jackson, I.C.d.l.S. Infrastructure Nationale Phenomin, L. Charles River, M.R.C. Harwell,
P. Toronto Centre for, I. Wellcome Trust Sanger, R.B. Center, D.G. MacArthur, G.P.
Tocchini-Valentini, X. Gao, P. Flicek, A. Bradley, W.C. Skarnes, M.J. Justice, H.E.
Parkinson, M. Moore, S. Wells, R.E. Braun, K.L. Svenson, M.H. de Angelis, Y. Herault, T.
Mohun, A.M. Mallon, R.M. Henkelman, S.D. Brown, D.J. Adams, K.C. Lloyd, C. McKerlie,
A.L. Beaudet, M. Bucan, and S.A. Murray, High-throughput discovery of novel
developmental phenotypes. Nature, 2016. 537(7621): p. 508-514.
 
(https://www.ncbi.nlm.nih.gov/pubmed/27626380)
 
14. Captur, G., R. Wilson, M.F. Bennett, G. Luxan, A. Nasis, J.L. de la Pompa, J.C.
Moon, and T.J. Mohun, Morphogenesis of myocardial trabeculae in the mouse embryo. J
Anat, 2016. 229(2): p. 314-25.
 
(https://www.ncbi.nlm.nih.gov/pubmed/27020702)
 
15. Anderson, R.H., S. Mori, D.E. Spicer, N.A. Brown and T.J. Mohun, Development
and Morphology of the Ventricular Outflow Tracts. World J Pediatr Congenit Heart Surg,
2016. 7(5): p. 561-77.
 
(https://www.ncbi.nlm.nih.gov/pubmed/27587491)
 
16. Anderson, R.H., N.A. Brown and T.J. Mohun, Insights regarding the normal and
abnormal formation of the atrial and ventricular septal structures. Clin Anat, 2016. 29(3):
p. 290-304.
 
(https://www.ncbi.nlm.nih.gov/pubmed/26378977)
 
17. Spicer, D.E., D.J. Henderson, B. Chaudhry, T.J. Mohun and R.H. Anderson, The
anatomy and development of normal and abnormal coronary arteries. Cardiol Young,
2015. 25(8): p. 1493-503.
 
(https://www.ncbi.nlm.nih.gov/pubmed/26675596)
 
18. Notari, M., Y. Hu, G. Sutendra, Z. Dedeic, M. Lu, L. Dupays, A. Yavari, C.A. Carr, S.
Zhong, A. Opel, A. Tinker, K. Clarke, H. Watkins, D.J. Ferguson, D.P. Kelsell, S. de
Noronha, M.N. Sheppard, M. Hollinshead, T.J. Mohun, and X. Lu, iASPP, a previously
unidentified regulator of desmosomes, prevents arrhythmogenic right ventricular
cardiomyopathy (ARVC)-induced sudden death. Proc Natl Acad Sci U S A, 2015. 112(9):
p. E973-81.
 
(https://www.ncbi.nlm.nih.gov/pubmed/25691752)
 
19. Matsui, H., S.Y. Ho, T.J. Mohun and H.M. Gardiner, Postmortem high-resolution
episcopic microscopy (HREM) of small human fetal hearts. Ultrasound Obstet Gynecol,
2015. 45(4): p. 492-3.
 
(https://www.ncbi.nlm.nih.gov/pubmed/25833371)
 
20. Geyer, S.H., I.E. Tinhofer, D.B. Lumenta, L.P. Kamolz, L. Branski, C.C. Finnerty,
D.N. Herndon, and W.J. Weninger, High-resolution episcopic microscopy (HREM): a
useful technique for research in wound care. Ann Anat, 2015. 197: p. 3-10.
 
(https://www.ncbi.nlm.nih.gov/pubmed/25466930)
 
21. Dupays, L., C. Shang, R. Wilson, S. Kotecha, S. Wood, N. Towers, and T. Mohun,
Sequential Binding of MEIS1 and NKX2-5 on the Popdc2 Gene: A Mechanism for
Spatiotemporal Regulation of Enhancers during Cardiogenesis. Cell Rep, 2015. 13(1): p.
183-195.
 
(https://www.ncbi.nlm.nih.gov/pubmed/26411676)
 
22. Bharucha, T., D.E. Spicer, T.J. Mohun, D. Black, G.W. Henry, and R.H. Anderson,
Cor triatriatum or divided atriums: which approach provides the better understanding?
Cardiol Young, 2015. 25(2): p. 193-207.
 
(https://www.ncbi.nlm.nih.gov/pubmed/24820379)
 
23. Bailliard, F., D.E. Spicer, T.J. Mohun, G.W. Henry and R.H. Anderson, The
problems that exist when considering the anatomic variability between the channels that
permit interventricular shunting. Cardiol Young, 2015. 25(1): p. 15-28.
 
(https://www.ncbi.nlm.nih.gov/pubmed/24865597)
 
24. Anderson, R.H., D.E. Spicer, G.W. Henry, C. Rigsby, A.M. Hlavacek, and T.J.
Mohun, What is aortic overriding? Cardiol Young, 2015. 25(4): p. 612-25.
 
(https://www.ncbi.nlm.nih.gov/pubmed/24983250)
 
25. Anderson, R.H., T.J. Mohun and N.A. Brown, Clarifying the morphology of the
ostium primum defect. J Anat, 2015. 226(3): p. 244-57.
 
(https://www.ncbi.nlm.nih.gov/pubmed/25676858)
 
26. Weninger, W.J., S.H. Geyer, A. Martineau, A. Galli, D.J. Adams, R. Wilson, and T.J.
Mohun, Phenotyping structural abnormalities in mouse embryos using high-resolution
episcopic microscopy. Dis Model Mech, 2014. 7(10): p. 1143-52.
 
(https://www.ncbi.nlm.nih.gov/pubmed/25256713)
 
27. Spicer, D.E., J.M. Bridgeman, N.A. Brown, T.J. Mohun and R.H. Anderson, The
anatomy and development of the cardiac valves. Cardiol Young, 2014. 24(6): p. 1008-22.
 
(https://www.ncbi.nlm.nih.gov/pubmed/25647375)
 
28. Rochais, F., R. Sturny, C.M. Chao, K. Mesbah, M. Bennett, T.J. Mohun, S. Bellusci,
and R.G. Kelly, FGF10 promotes regional foetal cardiomyocyte proliferation and adult
cardiomyocyte cell-cycle re-entry. Cardiovasc Res, 2014. 104(3): p. 432-42.
 
(https://www.ncbi.nlm.nih.gov/pubmed/25344367)
 
29. Rana, M.S., M. Theveniau-Ruissy, C. De Bono, K. Mesbah, A. Francou, M.
Rammah, J.N. Dominguez, M. Roux, B. Laforest, R.H. Anderson, T. Mohun, S. Zaffran,
V.M. Christoffels, and R.G. Kelly, Tbx1 coordinates addition of posterior second heart
field progenitor cells to the arterial and venous poles of the heart. Circ Res, 2014. 115(9):
p. 790-9.
 
(https://www.ncbi.nlm.nih.gov/pubmed/25190705)
 
30. Geyer, S.H., M.M. Nohammer, M. Matha, L. Reissig, I.E. Tinhofer, and W.J.
Weninger, High-resolution episcopic microscopy (HREM): a tool for visualizing skin
biopsies. Microsc Microanal, 2014. 20(5): p. 1356-64.
 
(https://www.ncbi.nlm.nih.gov/pubmed/25198556)
 
31. Captur, G., L.R. Lopes, V. Patel, C. Li, P. Bassett, P. Syrris, D.M. Sado, V.
Maestrini, T.J. Mohun, W.J. McKenna, V. Muthurangu, P.M. Elliott, and J.C. Moon,
Abnormal cardiac formation in hypertrophic cardiomyopathy: fractal analysis of
trabeculae and preclinical gene expression. Circ Cardiovasc Genet, 2014. 7(3): p. 241-8.
 
(https://www.ncbi.nlm.nih.gov/pubmed/24704860)
 
32. Anderson, R.H., D.E. Spicer, N.A. Brown and T.J. Mohun, The development of
septation in the four-chambered heart. Anat Rec (Hoboken), 2014. 297(8): p. 1414-29.
 
(https://www.ncbi.nlm.nih.gov/pubmed/24863187)
 
33. Vettukattil, J.J., Z. Ahmed, A.P. Salmon, T. Mohun and R.H. Anderson, Defects in
the oval fossa: morphologic variations and impact on transcatheter closure. J Am Soc
Echocardiogr, 2013. 26(2): p. 192-9.
 
(https://www.ncbi.nlm.nih.gov/pubmed/23265438)
 
34. Norris, F.C., M.D. Wong, N.D. Greene, P.J. Scambler, T. Weaver, W.J. Weninger,
T.J. Mohun, R.M. Henkelman, and M.F. Lythgoe, A coming of age: advanced imaging
technologies for characterising the developing mouse. Trends Genet, 2013. 29(12): p.
700-11.
 
(https://www.ncbi.nlm.nih.gov/pubmed/24035368)
 
35. Maurer, B., S.H. Geyer and W.J. Weninger, A chick embryo with a yet unclassified
type of cephalothoracopagus malformation and a hypothesis for explaining its genesis.
Anat Histol Embryol, 2013. 42(3): p. 191-200.
 
(https://www.ncbi.nlm.nih.gov/pubmed/22971166)
 
36. Captur, G., V. Muthurangu, C. Cook, A.S. Flett, R. Wilson, A. Barison, D.M. Sado,
S. Anderson, W.J. McKenna, T.J. Mohun, P.M. Elliott, and J.C. Moon, Quantification of
left ventricular trabeculae using fractal analysis. J Cardiovasc Magn Reson, 2013. 15: p.

(https://www.ncbi.nlm.nih.gov/pubmed/23663522)
 
37. Breckenridge, R.A., I. Piotrowska, K.E. Ng, T.J. Ragan, J.A. West, S. Kotecha, N.
Towers, M. Bennett, P.C. Kienesberger, R.T. Smolenski, H.K. Siddall, J.L. Offer, M.M.
Mocanu, D.M. Yelon, J.R. Dyck, J.L. Griffin, A.Y. Abramov, A.P. Gould, and T.J. Mohun,
Hypoxic regulation of hand1 controls the fetal-neonatal switch in cardiac metabolism.
PLoS Biol, 2013. 11(9): p. e1001666.
 
(https://www.ncbi.nlm.nih.gov/pubmed/24086110)
 
38. Bamforth, S.D., B. Chaudhry, M. Bennett, R. Wilson, T.J. Mohun, L.H. Van Mierop,
D.J. Henderson, and R.H. Anderson, Clarification of the identity of the mammalian fifth
pharyngeal arch artery. Clin Anat, 2013. 26(2): p. 173-82.
 
(https://www.ncbi.nlm.nih.gov/pubmed/22623372)
 
39. Anderson, R.H., D.E. Spicer, J.M. Giroud and T.J. Mohun, Tetralogy of Fallot:
nosological, morphological, and morphogenetic considerations. Cardiol Young, 2013.
23(6): p. 858-66.
 
(https://www.ncbi.nlm.nih.gov/pubmed/24401259)
 
40. Anderson, R.H., N.A. Brown, T.J. Mohun and A.F. Moorman, Insights from cardiac
development relevant to congenital defects and adult clinical anatomy. J Cardiovasc
Transl Res, 2013. 6(2): p. 107-17.
 
(https://www.ncbi.nlm.nih.gov/pubmed/23225336)
 
41. Sizarov, A., W.H. Lamers, T.J. Mohun, N.A. Brown, R.H. Anderson, and A.F.
Moorman, Three-dimensional and molecular analysis of the arterial pole of the
developing human heart. J Anat, 2012. 220(4): p. 336-49.
 
(https://www.ncbi.nlm.nih.gov/pubmed/22296102)
 
42. Mohun, T.J. and W.J. Weninger, Episcopic three-dimensional imaging of embryos.
Cold Spring Harb Protoc, 2012. 2012(6): p. 641-6.
 
(https://www.ncbi.nlm.nih.gov/pubmed/22661435)
 
43. Mohun, T.J. and W.J. Weninger, Embedding embryos for episcopic fluorescence
image capturing (EFIC). Cold Spring Harb Protoc, 2012. 2012(6): p. 675-7.
 
(https://www.ncbi.nlm.nih.gov/pubmed/22661436)
 
44. Mohun, T.J. and W.J. Weninger, Embedding embryos for high-resolution episcopic
microscopy (HREM). Cold Spring Harb Protoc, 2012. 2012(6): p. 678-80.

(https://www.ncbi.nlm.nih.gov/pubmed/22661437)
 
45. Mohun, T.J. and W.J. Weninger, Generation of volume data by episcopic three-
dimensional imaging of embryos. Cold Spring Harb Protoc, 2012. 2012(6): p. 681-2.
 
(https://www.ncbi.nlm.nih.gov/pubmed/22661438)
 
46. Lescroart, F., T. Mohun, S.M. Meilhac, M. Bennett and M. Buckingham, Lineage
tree for the venous pole of the heart: clonal analysis clarifies controversial genealogy
based on genetic tracing. Circ Res, 2012. 111(10): p. 1313-22.
 
(https://www.ncbi.nlm.nih.gov/pubmed/22855565)
 
47. Gindes, L., H. Matsui, R. Achiron, T. Mohun, S.Y. Ho, and H. Gardiner, Comparison
of ex-vivo high-resolution episcopic microscopy with in-vivo four-dimensional high-
resolution transvaginal sonography of the first-trimester fetal heart. Ultrasound Obstet
Gynecol, 2012. 39(2): p. 196-202.
 
(https://www.ncbi.nlm.nih.gov/pubmed/21638368)
 
48. Anderson, R.H., B. Chaudhry, T.J. Mohun, S.D. Bamforth, D. Hoyland, H.M. Phillips,
S. Webb, A.F. Moorman, N.A. Brown, and D.J. Henderson, Normal and abnormal
development of the intrapericardial arterial trunks in humans and mice. Cardiovasc Res,
2012. 95(1): p. 108-15.
 
(https://www.ncbi.nlm.nih.gov/pubmed/22499773)
 
49. Mohun, T.J. and W.J. Weninger, Imaging heart development using high-resolution
episcopic microscopy. Curr Opin Genet Dev, 2011. 21(5): p. 573-8.
 
(https://www.ncbi.nlm.nih.gov/pubmed/21893408)
 
50. de Boer, B.A., A.T. Soufan, J. Hagoort, T.J. Mohun, M.J. van den Hoff, A. Hasman,
F.P. Voorbraak, A.F. Moorman, and J.M. Ruijter, The interactive presentation of 3D
information obtained from reconstructed datasets and 3D placement of single histological
sections with the 3D portable document format. Development, 2011. 138(1): p. 159-67.
 
(https://www.ncbi.nlm.nih.gov/pubmed/21138978)
 
51. Anderson, R.H., T.J. Mohun and A.F. Moorman, What is a ventricle? Cardiol Young,
2011. 21 Suppl 2: p. 14-22.
 
(https://www.ncbi.nlm.nih.gov/pubmed/22152524)
 
52. Matsui, H., T. Mohun and H.M. Gardiner, Three-dimensional reconstruction imaging
of the human foetal heart in the first trimester. Eur Heart J, 2010. 31(4): p. 415.
 
(https://www.ncbi.nlm.nih.gov/pubmed/19965862)
 
53. Dunlevy, L., M. Bennett, A. Slender, E. Lana-Elola, V.L. Tybulewicz, E.M. Fisher,
and T. Mohun, Down's syndrome-like cardiac developmental defects in embryos of the
transchromosomic Tc1 mouse. Cardiovasc Res, 2010. 88(2): p. 287-95.
 
(https://www.ncbi.nlm.nih.gov/pubmed/20558441)
 
54. Anderson, R.H., A. Cook, N.A. Brown, D.J. Henderson, B. Chaudhry, and T. Mohun,
Development of the outflow tracts with reference to aortopulmonary windows and
aortoventricular tunnels. Cardiol Young, 2010. 20 Suppl 3: p. 92-9.
 
(https://www.ncbi.nlm.nih.gov/pubmed/21087564)
 
55. Geyer, S.H., T.J. Mohun and W.J. Weninger, Visualizing vertebrate embryos with
episcopic 3D imaging techniques. ScientificWorldJournal, 2009. 9: p. 1423-37.
 
(https://www.ncbi.nlm.nih.gov/pubmed/20024516)
 
56. Weninger, W.J. and T.J. Mohun, Three-dimensional analysis of molecular signals
with episcopic imaging techniques. Methods Mol Biol, 2007. 411: p. 35-46.
 
(https://www.ncbi.nlm.nih.gov/pubmed/18287637)
 
57. Weninger, W.J., S.H. Geyer, T.J. Mohun, D. Rasskin-Gutman, T. Matsui, I. Ribeiro,
F. Costa Lda, J.C. Izpisua-Belmonte, and G.B. Muller, High-resolution episcopic
microscopy: a rapid technique for high detailed 3D analysis of gene activity in the context
of tissue architecture and morphology. Anat Embryol (Berl), 2006. 211(3): p. 213-21.
 
(https://www.ncbi.nlm.nih.gov/pubmed/16429276)
 
58. Going, J.J. and T.J. Mohun, Human breast duct anatomy, the 'sick lobe' hypothesis
and intraductal approaches to breast cancer. Breast Cancer Res Treat, 2006. 97(3): p.
285-91.
 
(https://www.ncbi.nlm.nih.gov/pubmed/16791485)