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Software / 3D Viewer

3D Viewer for 2D
Image Stacks Free

Turn PNG, JPG and TIF image stacks into fully explorable 3D volumes free of charge. Browse individual planes, render and measure in 3D, clip through structures, overlay multiple datasets, export videos, and generate 3D-printable STL models. Built with HREM data in mind, and equally suited to  similar stack image techniques.

3D Viewer Mouse

A SIMPLE TOOL FOR 3D IMAGE STACKS

Straightforward 3D visualisation, without the learning curve

The 3D Viewer is a straightforward viewer and toolkit for 2D image stacks, built for people who want results quickly without a complex software package or a steep learning curve. It's free to all, and its capabilities continue to expand over time.

EVERYTHING INCLUDED

The full feature set

Across Plane Viewer, Volume Viewer and STL Wizard, the 3D Viewer covers the full workflow from raw image stack to measured, clipped, overlaid, rendered and printable 3D data.

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PNG, JPG & TIF support

load common image stack formats directly

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Clipping & cropping tools

cut into a volume to focus on a region of interest

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Plane-by-plane browsing

 step through individual 2D slices in a clean workflow

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Basic measurement tools 

take simple distance and dimension measurements in 3D

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Full 3D volume rendering 

 with clear, intuitive camera controls

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Frame export & video creation

export still frames or generate rotating video clips

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A Simple Tool for 3D Image Stacks

This application is a straightforward viewer and toolkit for 2D image stacks. It’s built for people who want to get results quickly, without needing a complex software package or steep learning curve.

It’s free to all, and capabilities continue to expand over time.

Plane Viewer showing a cross-section slice of an embryonic heart from an image stack.

Plane Viewer

Browse and visualise individual image planes from a stack in a clean 2D workflow. Designed for simple navigation, quick inspection, and easy resizing and updates while you explore.

Highlights

  • View slices from PNG/JPG/TIF stacks

  • Resize and update views easily

  • Great for checking structure, contrast, and consistency

 time.

Volume Viewer

View your image stack in 3D with practical controls aimed at exploration and communication rather than complexity. Useful for cropping, basic measurements, and exporting views.

Highlights

  • 3D volume viewing with clear camera controls

  • Cropping tools to focus on a region of interest

  • Simple measurement tools

  • Colour/appearance controls

  • Export frames and create videos (where supported)

Transform Images to 3D Printable Models

STL Wizard – turn stacks into 3D-printable models


Generate an STL from a 2D image stack for 3D printing or sharing. Includes tools to improve the output by removing holes and cleaning up results.

Highlights

  • Create STL directly from image stacks

  • Hole removal / clean-up tools

  • Export printable models for demos, teaching, or prototyping

Who it’s for

Made for anyone working with image stacks, including microscopy, engineering inspection, research datasets, teaching materials, and general 3D visualisation from 2D slices.​​

Heart rendered image captured in 3D viewer software using a stack

View a HREM Dataset

Visualise a HREM dataset, convert to a 3D and use the volume viewer with a real stack. This stack is downsized to 10% of the original data and has a voxel spacing of X/Y:6um Z: 3um. 

 

For more information or help with 3D rendering, contact us!

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Contact our Experts

Want to know more about 3D visualisation, request a new feature or get a tutorial?

Contact our friendly team!

Email:
hello@indigo-scientific.co.uk

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